Presentations

  • [60 minutes] Lecture 3 - Sequence alignment [PDF]

Exercises

  • [15 minutes] Practical 1 - Assessing sequencing data quality. [HTML]

    Learn to do control the quality of sequencing data using fastQC, fastq screen, multiQC.

  • [90 minutes] Practical 2 - Sequence alignment & introduction to IGV. [HTML]

    Utilization of bowtie2, samtools, deeptools to generate the alignement tracks Visualization of the alignment using IGV

[Quiz]

[Quiz correction]